
Antibody preparation for Western blot analysis
Author: Lillian Hutchinson | Major: Chemical Engineering | Semester: Spring 2024
My name is Lillian Hutchinson, and I am part of the College of Engineering. I am
majoring in chemical engineering with a minor in mathematics. I work in Dr. Young Hye Song’s
lab in the biomedical engineering department.
I began working in Dr. Song’s lab during the summer of 2023 through a National Science
Foundation Research Experience for Undergraduate Students (REU). My research focused on
the optimization of a tissue model specifically used for diseased tissue. When applying to the
REU, this was the project I was most interested in due to the applications within the medical
field. Fibrosis, characterized by the accumulation of excess collagen, causes the scarring of
tissue, eventually leading to organ failure. The microenvironment of fibrotic tissue can be
modeled using collagen I hydrogels that are modified to have thicker collagen fibers. Fibrosis
can occur in tissue that has a natural directionality which can be mimicked by stretching the
hydrogels. I optimized a model with thicker, aligned collagen fiber that can be used to test
various treatments for disease.
As I continued working in the lab, my research evolved into testing the interactions
between cells and this diseased environment in comparison to cells in a healthy tissue model.
Cells secrete an enzyme that naturally degrades collagen, matrix metalloproteinase-14
(MMP-14). I hypothesized that MMP-14 expression would be increased in the diseased tissue
model in comparison to the healthy tissue model. MMP-14 expression is important within the
disease model because as the enzyme degrades collagen, it creates a space for cells to attach
and grow. The expression of MMP-14 would be increased in a disease model because of the
prevalence of thicker collagen fibers.
My experiment compares tissue models with a thin mesh of collagen fibers against
thicker collagen fibers as well as models with aligned and unaligned fibers. Using image
analysis and western blot testing, I have begun to compare the concentration of MMP-14
secreted by adipose-derived stem cells in each model. This semester, I focused on the aligned
and unaligned healthy tissue model and will expand testing to the diseased tissue model in the
future.
During this work, issues with quantitative analysis arose. After performing Western blot
testing, unexpected and unidentified proteins were secreted by the cells. Due to this, I am
working alongside the graduate students in my lab to determine what the proteins could be as
well as fine-tune the Western blot protocol. This has caused a slight setback and will result in
further testing of the healthy tissue model next semester, alongside that of the diseased model.
In the future, I plan on attending a conference to present this work.
Funding from the Honors College has allowed me to buy antibodies to identify proteins
during western blot testing. Using previous publications, I identified an antibody for MMP-14 and
was able to order it for protein quantification. It has also enabled me to focus on my research
instead of getting a part-time job. The grant has helped me to pursue my goals and a future
Ph.D.